Pre-training of Graph Augmented Transformers for Medication Recommendation

2 June 2019

Jimeng Sun

Papers citing "Pre-training of Graph Augmented Transformers for Medication Recommendation"

46 / 46 papers shown

Title
LabTOP: A Unified Model for Lab Test Outcome Prediction on Electronic Health Records Sujeong Im Jungwoo Oh Edward Choi BDL LM&MA 60 0 0 20 Feb 2025
Large Language Model Distilling Medication Recommendation Model Qidong Liu Xian Wu Xiangyu Zhao Yuanshao Zhu Zijian Zhang Feng Tian Yefeng Zheng LM&MA 99 17 0 28 Jan 2025
A Contrastive Pretrain Model with Prompt Tuning for Multi-center Medication Recommendation Qiang Liu Zhaopeng Qiu Xiangyu Zhao X. Wu Zijian Zhang Tong Xu Feng Tian 46 0 0 31 Dec 2024
Dynamic Hypergraph-Enhanced Prediction of Sequential Medical Visits Wangying Yang Zitao Zheng Shi Bo Zhizhong Wu Bo Zhang 42 11 0 08 Aug 2024
TACCO: Task-guided Co-clustering of Clinical Concepts and Patient Visits for Disease Subtyping based on EHR Data Ziyang Zhang Hejie Cui Ran Xu Yuzhang Xie Joyce C. Ho Carl Yang CML 42 2 0 14 Jun 2024
Time-aware Heterogeneous Graph Transformer with Adaptive Attention Merging for Health Event Prediction Shibo Li Hengliang Cheng Weihua Li 35 0 0 23 Apr 2024
Leave No Patient Behind: Enhancing Medication Recommendation for Rare Disease Patients Zihao Zhao Yi Jing Fuli Feng Jiancan Wu Chongming Gao Xiangnan He 26 9 0 26 Mar 2024
Inadequacy of common stochastic neural networks for reliable clinical decision support Adrian Lindenmeyer Malte Blattmann S. Franke Thomas Neumuth Daniel Schneider BDL 40 1 0 24 Jan 2024
Knowledge-Induced Medicine Prescribing Network for Medication Recommendation A. Mulyadi Heung-Il Suk 45 1 0 23 Oct 2023
A Comprehensive Review of Generative AI in Healthcare Yasin Shokrollahi Sahar Yarmohammadtoosky Matthew M. Nikahd Pengfei Dong Xianqi Li Linxia Gu MedIm AI4CE 32 19 0 01 Oct 2023
A Review on Knowledge Graphs for Healthcare: Resources, Applications, and Promises Hejie Cui Jiaying Lu Shiyu Wang Shiyu Wang Wenjing Ma ... Fei Wang Carl Yang Mengdi Huai Fei Wang Carl Yang 47 12 0 07 Jun 2023
Toward Cohort Intelligence: A Universal Cohort Representation Learning Framework for Electronic Health Record Analysis Changshuo Liu Wenqiao Zhang Beng Chin Ooi J. Yip Lingze Zeng Kaiping Zheng 14 1 0 10 Apr 2023
Multimodal Data Integration for Oncology in the Era of Deep Neural Networks: A Review Asim Waqas Aakash Tripathi Ravichandran Ramachandran Paul Stewart Ghulam Rasool AI4CE 42 32 0 11 Mar 2023
Clinical Decision Transformer: Intended Treatment Recommendation through Goal Prompting Seunghyun Lee D. Lee Sujeong Im N. Kim Sung-Min Park 30 11 0 01 Feb 2023
Foresight -- Generative Pretrained Transformer (GPT) for Modelling of Patient Timelines using EHRs Z. Kraljevic D. Bean Anthony Shek R. Bendayan H. Hemingway ... Alfie Baston Jack Ross Esther Idowu J. Teo Richard J. B. Dobson AI4TS 26 20 0 13 Dec 2022
Semantic Decomposition Improves Learning of Large Language Models on EHR Data David A. Bloore R. Gauriau Anna Decker Jacob Oppenheim 29 1 0 14 Nov 2022
Knowledge-Driven New Drug Recommendation Zhenbang Wu Huaxiu Yao Zhe Su David M. Liebovitz Lucas Glass James Zou Chelsea Finn Jimeng Sun 33 4 0 11 Oct 2022
Unsupervised pre-training of graph transformers on patient population graphs Chantal Pellegrini Nassir Navab Anees Kazi MedIm AI4CE 51 11 0 21 Jul 2022
Multimodal Learning with Transformers: A Survey Peng Xu Xiatian Zhu David Clifton ViT 79 531 0 13 Jun 2022
Trustworthy Graph Neural Networks: Aspects, Methods and Trends He Zhang Bang Wu Xingliang Yuan Shirui Pan Hanghang Tong Jian Pei 47 104 0 16 May 2022
Graph Enhanced BERT for Query Understanding Juanhui Li Yao Ma Weizhen Zeng Suqi Cheng Jiliang Tang Shuaiqiang Wang Dawei Yin 29 7 0 03 Apr 2022
Multimodal data matters: language model pre-training over structured and unstructured electronic health records Sicen Liu Xiaolong Wang Yongshuai Hou Ge Li Hui Wang Huiqin Xu Yang Xiang Buzhou Tang 52 30 0 25 Jan 2022
Molecular Contrastive Learning with Chemical Element Knowledge Graph Yin Fang Qiang Zhang Haihong Yang Xiang Zhuang Shumin Deng Wen Zhang Minghai Qin Zhuo Chen Xiaohui Fan Huajun Chen 15 109 0 01 Dec 2021
CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks Chao Pang Xinzhuo Jiang Krishna S. Kalluri M. Spotnitz Ruijun Chen A. Perotte Karthik Natarajan OOD 19 58 0 10 Nov 2021
Multi-Task Prediction of Clinical Outcomes in the Intensive Care Unit using Flexible Multimodal Transformers B. Shickel P. Tighe A. Bihorac Parisa Rashidi 30 5 0 09 Nov 2021
Machine Learning for Multimodal Electronic Health Records-based Research: Challenges and Perspectives Ziyi Liu Jiaqi Zhang Yongshuai Hou Xinran Zhang Ge Li Yang Xiang 24 14 0 09 Nov 2021
Classification of hierarchical text using geometric deep learning: the case of clinical trials corpus Sohrab Ferdowsi Nikolay Borissov J. Knafou P. Amini Douglas Teodoro 16 7 0 04 Oct 2021
Unifying Heterogeneous Electronic Health Records Systems via Text-Based Code Embedding Kyunghoon Hur Jiyoung Lee Jungwoo Oh Wesley Price Young-Hak Kim Edward Choi 43 17 0 08 Aug 2021
MedGPT: Medical Concept Prediction from Clinical Narratives Z. Kraljevic Anthony Shek D. Bean R. Bendayan J. Teo Richard J. B. Dobson LM&MA AI4TS MedIm 25 39 0 07 Jul 2021
Productivity, Portability, Performance: Data-Centric Python Yiheng Wang Yao Zhang Yanzhang Wang Yan Wan Jiao Wang Zhongyuan Wu Yuhao Yang Bowen She 59 95 0 01 Jul 2021
Self-Supervised Graph Learning with Hyperbolic Embedding for Temporal Health Event Prediction Chang Lu Chandan K. Reddy Yue Ning 30 27 0 09 Jun 2021
MoCL: Data-driven Molecular Fingerprint via Knowledge-aware Contrastive Learning from Molecular Graph Mengying Sun Jing Xing Huijun Wang Bin Chen Jiayu Zhou 24 115 0 05 Jun 2021
Collaborative Graph Learning with Auxiliary Text for Temporal Event Prediction in Healthcare Chang Lu Chandan K. Reddy Prithwish Chakraborty Samantha Kleinberg Yue Ning 26 58 0 16 May 2021
Self-supervised Learning on Graphs: Contrastive, Generative,or Predictive Lirong Wu Haitao Lin Zhangyang Gao Cheng Tan Stan.Z.Li SSL 35 243 0 16 May 2021
Change Matters: Medication Change Prediction with Recurrent Residual Networks Chaoqi Yang Cao Xiao Lucas Glass Jimeng Sun BDL 32 67 0 05 May 2021
SafeDrug: Dual Molecular Graph Encoders for Recommending Effective and Safe Drug Combinations Chaoqi Yang Cao Xiao Fenglong Ma Lucas Glass Jimeng Sun 30 78 0 05 May 2021
MeSIN: Multilevel Selective and Interactive Network for Medication Recommendation Yang An Liang Zhang Mao You Xueqing Tian Bo Jin Xiaopeng Wei 6 18 0 22 Apr 2021
Forecasting: theory and practice F. Petropoulos D. Apiletti Vassilios Assimakopoulos M. Z. Babai Devon K. Barrow ... J. Arenas Xiaoqian Wang R. L. Winkler Alisa Yusupova F. Ziel AI4TS 41 365 0 04 Dec 2020
SumGNN: Multi-typed Drug Interaction Prediction via Efficient Knowledge Graph Summarization Yue Yu Kexin Huang Chao Zhang Lucas Glass Jimeng Sun Cao Xiao 28 120 0 04 Oct 2020
A Comprehensive Evaluation of Multi-task Learning and Multi-task Pre-training on EHR Time-series Data Matthew B. A. McDermott Bret A. Nestor Evan Kim Wancong Zhang Anna Goldenberg Peter Szolovits Marzyeh Ghassemi Csail AI4TS 22 15 0 20 Jul 2020
Med-BERT: pre-trained contextualized embeddings on large-scale structured electronic health records for disease prediction L. Rasmy Yang Xiang Z. Xie Cui Tao Degui Zhi AI4MH LM&MA 41 659 0 22 May 2020
VGCN-BERT: Augmenting BERT with Graph Embedding for Text Classification Zhibin Lu Pan Du J. Nie 36 126 0 12 Apr 2020
Graph-Bert: Only Attention is Needed for Learning Graph Representations Jiawei Zhang Haopeng Zhang Congying Xia Li Sun 31 299 0 15 Jan 2020
Artificial Intelligence for Social Good: A Survey Zheyuan Ryan Shi Claire Wang Fei Fang AI4TS 32 81 0 07 Jan 2020
Learning the Graphical Structure of Electronic Health Records with Graph Convolutional Transformer Edward Choi Zhen Xu Yujia Li Michael W. Dusenberry Gerardo Flores Yuan Xue Andrew M. Dai MedIm 24 238 0 11 Jun 2019
MedGCN: Medication recommendation and lab test imputation via graph convolutional networks Chengsheng Mao Liang Yao Yuan Luo GNN 31 48 0 31 Mar 2019