OPA2Vec: combining formal and informal content of biomedical ontologies
to improve similarity-based prediction

OPA2Vec: combining formal and informal content of biomedical ontologies to improve similarity-based prediction

29 April 2018

Xin Gao

Robert Hoehndorf

Papers citing "OPA2Vec: combining formal and informal content of biomedical ontologies to improve similarity-based prediction"

9 / 9 papers shown

Title
Ontology Embedding: A Survey of Methods, Applications and Resources Jiaoyan Chen Olga Mashkova Fernando Zhapa-Camacho Robert Hoehndorf Yuan He Ian Horrocks 50 4 0 16 Jun 2024
Embedding Ontologies via Incorporating Extensional and Intensional Knowledge Keyu Wang Guilin Qi Jiaoyan Chen Yi Huang Tianxing Wu 63 1 0 20 Jan 2024
Description Logic EL++ Embeddings with Intersectional Closure X. Peng Zhenwei Tang Maxat Kulmanov Kexin Niu Robert Hoehndorf 25 18 0 28 Feb 2022
Contextual Semantic Embeddings for Ontology Subsumption Prediction Jiaoyan Chen Yuan He Yuxia Geng Ernesto Jiménez-Ruiz Hang Dong Ian Horrocks 35 50 0 20 Feb 2022
Prediction of Adverse Biological Effects of Chemicals Using Knowledge Graph Embeddings E. B. Myklebust Ernesto Jiménez-Ruiz Jiaoyan Chen Raoul Wolf K. Tollefsen 18 9 0 08 Dec 2021
Predicting Gene-Disease Associations with Knowledge Graph Embeddings over Multiple Ontologies Susana Nunes R. T. Sousa Catia Pesquita AI4CE 6 16 0 11 May 2021
Knowledge-based Biomedical Data Science 2019 Tiffany J. Callahan Harrison Pielke-Lombardo Ignacio J. Tripodi Lawrence E. Hunter AI4CE 21 36 0 08 Oct 2019
Deep learning in bioinformatics: introduction, application, and perspective in big data era Yu Li Chao Huang Lizhong Ding Zhongxiao Li Yijie Pan Xin Gao AI4CE 21 295 0 28 Feb 2019
EL Embeddings: Geometric construction of models for the Description Logic EL ++ Maxat Kulmanov Wang Liu-Wei Yuan Yan Robert Hoehndorf 15 106 0 27 Feb 2019