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Turbocharging Gaussian Process Inference with Approximate Sketch-and-Project

19 May 2025
Pratik Rathore
Zachary Frangella
Sachin Garg
Shaghayegh Fazliani
Michał Dereziński
Madeleine Udell
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Abstract

Gaussian processes (GPs) play an essential role in biostatistics, scientific machine learning, and Bayesian optimization for their ability to provide probabilistic predictions and model uncertainty. However, GP inference struggles to scale to large datasets (which are common in modern applications), since it requires the solution of a linear system whose size scales quadratically with the number of samples in the dataset. We propose an approximate, distributed, accelerated sketch-and-project algorithm (ADASAP\texttt{ADASAP}ADASAP) for solving these linear systems, which improves scalability. We use the theory of determinantal point processes to show that the posterior mean induced by sketch-and-project rapidly converges to the true posterior mean. In particular, this yields the first efficient, condition number-free algorithm for estimating the posterior mean along the top spectral basis functions, showing that our approach is principled for GP inference. ADASAP\texttt{ADASAP}ADASAP outperforms state-of-the-art solvers based on conjugate gradient and coordinate descent across several benchmark datasets and a large-scale Bayesian optimization task. Moreover, ADASAP\texttt{ADASAP}ADASAP scales to a dataset with >3⋅108> 3 \cdot 10^8>3⋅108 samples, a feat which has not been accomplished in the literature.

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@article{rathore2025_2505.13723,
  title={ Turbocharging Gaussian Process Inference with Approximate Sketch-and-Project },
  author={ Pratik Rathore and Zachary Frangella and Sachin Garg and Shaghayegh Fazliani and Michał Dereziński and Madeleine Udell },
  journal={arXiv preprint arXiv:2505.13723},
  year={ 2025 }
}
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