Enhancing Knowledge Graph Completion with GNN Distillation and Probabilistic Interaction Modeling

Knowledge graphs (KGs) serve as fundamental structures for organizing interconnected data across diverse domains. However, most KGs remain incomplete, limiting their effectiveness in downstream applications. Knowledge graph completion (KGC) aims to address this issue by inferring missing links, but existing methods face critical challenges: deep graph neural networks (GNNs) suffer from over-smoothing, while embedding-based models fail to capture abstract relational features. This study aims to overcome these limitations by proposing a unified framework that integrates GNN distillation and abstract probabilistic interaction modeling (APIM). GNN distillation approach introduces an iterative message-feature filtering process to mitigate over-smoothing, preserving the discriminative power of node representations. APIM module complements this by learning structured, abstract interaction patterns through probabilistic signatures and transition matrices, allowing for a richer, more flexible representation of entity and relation interactions. We apply these methods to GNN-based models and the APIM to embedding-based KGC models, conducting extensive evaluations on the widely used WN18RR and FB15K-237 datasets. Our results demonstrate significant performance gains over baseline models, showcasing the effectiveness of the proposed techniques. The findings highlight the importance of both controlling information propagation and leveraging structured probabilistic modeling, offering new avenues for advancing knowledge graph completion. And our codes are available atthis https URL.

@article{wang2025_2505.12272,
  title={ Enhancing Knowledge Graph Completion with GNN Distillation and Probabilistic Interaction Modeling },
  author={ Lingzhi Wang and Pengcheng Huang and Haotian Li and Yuliang Wei and Guodong Xin and Rui Zhang and Donglin Zhang and Zhenzhou Ji and Wei Wang },
  journal={arXiv preprint arXiv:2505.12272},
  year={ 2025 }
}