DC-Seg: Disentangled Contrastive Learning for Brain Tumor Segmentation with Missing Modalities

Accurate segmentation of brain images typically requires the integration of complementary information from multiple image modalities. However, clinical data for all modalities may not be available for every patient, creating a significant challenge. To address this, previous studies encode multiple modalities into a shared latent space. While somewhat effective, it remains suboptimal, as each modality contains distinct and valuable information. In this study, we propose DC-Seg (Disentangled Contrastive Learning for Segmentation), a new method that explicitly disentangles images into modality-invariant anatomical representation and modality-specific representation, by using anatomical contrastive learning and modality contrastive learning respectively. This solution improves the separation of anatomical and modality-specific features by considering the modality gaps, leading to more robust representations. Furthermore, we introduce a segmentation-based regularizer that enhances the model's robustness to missing modalities. Extensive experiments on the BraTS 2020 and a private white matter hyperintensity(WMH) segmentation dataset demonstrate that DC-Seg outperforms state-of-the-art methods in handling incomplete multimodal brain tumor segmentation tasks with varying missing modalities, while also demonstrate strong generalizability in WMH segmentation. The code is available atthis https URL.

@article{li2025_2505.11921,
  title={ DC-Seg: Disentangled Contrastive Learning for Brain Tumor Segmentation with Missing Modalities },
  author={ Haitao Li and Ziyu Li and Yiheng Mao and Zhengyao Ding and Zhengxing Huang },
  journal={arXiv preprint arXiv:2505.11921},
  year={ 2025 }
}