Self-Supervised Autoencoder Network for Robust Heart Rate Extraction from Noisy Photoplethysmogram: Applying Blind Source Separation to Biosignal Analysis

Biosignals can be viewed as mixtures measuring particular physiological events, and blind source separation (BSS) aims to extract underlying source signals from mixtures. This paper proposes a self-supervised multi-encoder autoencoder (MEAE) to separate heartbeat-related source signals from photoplethysmogram (PPG), enhancing heart rate (HR) detection in noisy PPG data. The MEAE is trained on PPG signals from a large open polysomnography database without any pre-processing or data selection. The trained network is then applied to a noisy PPG dataset collected during the daily activities of nine subjects. The extracted heartbeat-related source signal significantly improves HR detection as compared to the original PPG. The absence of pre-processing and the self-supervised nature of the proposed method, combined with its strong performance, highlight the potential of BSS in biosignal analysis.

@article{webster2025_2504.09132,
  title={ Self-Supervised Autoencoder Network for Robust Heart Rate Extraction from Noisy Photoplethysmogram: Applying Blind Source Separation to Biosignal Analysis },
  author={ Matthew B. Webster and Dongheon Lee and Joonnyong Lee },
  journal={arXiv preprint arXiv:2504.09132},
  year={ 2025 }
}