Vision Transformers (ViTs) have become popular in computer vision tasks. Backdoor attacks, which trigger undesirable behaviours in models during inference, threaten ViTs' performance, particularly in security-sensitive tasks. Although backdoor defences have been developed for Convolutional Neural Networks (CNNs), they are less effective for ViTs, and defences tailored to ViTs are scarce. To address this, we present Interleaved Ensemble Unlearning (IEU), a method for finetuning clean ViTs on backdoored datasets. In stage 1, a shallow ViT is finetuned to have high confidence on backdoored data and low confidence on clean data. In stage 2, the shallow ViT acts as a ``gate'' to block potentially poisoned data from the defended ViT. This data is added to an unlearn set and asynchronously unlearned via gradient ascent. We demonstrate IEU's effectiveness on three datasets against 11 state-of-the-art backdoor attacks and show its versatility by applying it to different model architectures.
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