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Privacy-preserving Federated Brain Tumour Segmentation

2 October 2019
Wenqi Li
Fausto Milletarì
Daguang Xu
Nicola Rieke
Jonny Hancox
Wentao Zhu
Maximilian Baust
Yan Cheng
Sébastien Ourselin
M. Jorge Cardoso
Andrew Feng
    FedML
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Abstract

Due to medical data privacy regulations, it is often infeasible to collect and share patient data in a centralised data lake. This poses challenges for training machine learning algorithms, such as deep convolutional networks, which often require large numbers of diverse training examples. Federated learning sidesteps this difficulty by bringing code to the patient data owners and only sharing intermediate model training updates among them. Although a high-accuracy model could be achieved by appropriately aggregating these model updates, the model shared could indirectly leak the local training examples. In this paper, we investigate the feasibility of applying differential-privacy techniques to protect the patient data in a federated learning setup. We implement and evaluate practical federated learning systems for brain tumour segmentation on the BraTS dataset. The experimental results show that there is a trade-off between model performance and privacy protection costs.

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