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Composable computation in discrete chemical reaction networks

26 February 2019
Eric E. Severson
David Haley
David Doty
    CoGe
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Abstract

We study the composability of discrete chemical reaction networks (CRNs) that stably compute (i.e., with probability 0 of error) integer-valued functions f:Nd→Nf:\mathbb{N}^d\to\mathbb{N}f:Nd→N. We consider output-oblivious CRNs in which the output species is never a reactant (input) to any reaction. The class of output-oblivious CRNs is fundamental, appearing in earlier studies of CRN computation, because it is precisely the class of CRNs that can be composed by simply renaming the output of the upstream CRN to match the input of the downstream CRN. Our main theorem precisely characterizes the functions fff stably computable by output-oblivious CRNs with an initial leader. The key necessary condition is that for sufficiently large inputs, fff is the minimum of a finite number of nondecreasing quilt-affine functions. (An affine function is linear with a constant offset; a quilt-affine function is linear with a periodic offset).

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