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Estimating the number of unseen species: A bird in the hand is worth log⁡n\log n logn in the bush

23 November 2015
A. Orlitsky
A. Suresh
Yihong Wu
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Abstract

Estimating the number of unseen species is an important problem in many scientific endeavors. Its most popular formulation, introduced by Fisher, uses nnn samples to predict the number UUU of hitherto unseen species that would be observed if t⋅nt\cdot nt⋅n new samples were collected. Of considerable interest is the largest ratio ttt between the number of new and existing samples for which UUU can be accurately predicted. In seminal works, Good and Toulmin constructed an intriguing estimator that predicts UUU for all t≤1t\le 1t≤1, thereby showing that the number of species can be estimated for a population twice as large as that observed. Subsequently Efron and Thisted obtained a modified estimator that empirically predicts UUU even for some t>1t>1t>1, but without provable guarantees. We derive a class of estimators that provably\textit{provably}provably predict UUU not just for constant t>1t>1t>1, but all the way up to ttt proportional to log⁡n\log nlogn. This shows that the number of species can be estimated for a population log⁡n\log nlogn times larger than that observed, a factor that grows arbitrarily large as nnn increases. We also show that this range is the best possible and that the estimators' mean-square error is optimal up to constants for any ttt. Our approach yields the first provable guarantee for the Efron-Thisted estimator and, in addition, a variant which achieves stronger theoretical and experimental performance than existing methodologies on a variety of synthetic and real datasets. The estimators we derive are simple linear estimators that are computable in time proportional to nnn. The performance guarantees hold uniformly for all distributions, and apply to all four standard sampling models commonly used across various scientific disciplines: multinomial, Poisson, hypergeometric, and Bernoulli product.

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